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Mathematical modeling of the formation of apoptosome in intrinsic pathway of apoptosis

Seongho Ryu, Shih-chieh Lin, Nadia Ugel, Marco Antoniotti, Bud Mishra

Journal:

Systems and Synthetic Biology

Année:

2008

Langue:

english

Fichier:

PDF, 943 KB

english, 2008

Negative pressure wound therapy using gauze and foam: histological, immunohistochemical and ultrasonography morphological analysis of the granulation tissue and scar tissue. Preliminary report of a clinical study

Marco Fraccalvieri, Enrico Zingarelli, Erind Ruka, Umberto Antoniotti, Renato Coda, Antonino Sarno, Maria Alessandra Bocchiotti, Stefano Bruschi

Journal:

International Wound Journal

Année:

2011

Langue:

english

Fichier:

PDF, 1.43 MB

english, 2011

From Bytes to Bedside: Data Integration and Computational Biology for Translational Cancer Research

Mathew, Jomol P., Taylor, Barry S., Bader, Gary D., Pyarajan, Saiju, Antoniotti, Marco, Chinnaiyan, Arul M., Sander, Chris, Burakoff, Steven J., Mishra, Bud

Journal:

PLoS Computational Biology

Année:

2007

Langue:

english

Fichier:

PDF, 423 KB

english, 2007

Hepatocyte-conditioned medium sustains endothelial differentiation of human hematopoietic-endothelial progenitors

Veronica Bordoni, Tonino Alonzi, Lucia Zanetta, Daniele Khouri, Annarita Conti, Marco Corazzari, Francesco Bertolini, Pierluigi Antoniotti, Giuseppe Pisani, Francesca Tognoli, Elisabetta Dejana, Marco

Journal:

Hepatology

Année:

2007

Langue:

english

Fichier:

PDF, 841 KB

english, 2007

An application of kernel methods to gene cluster temporal meta-analysis

Marco Antoniotti, Marco Carreras, Antonella Farinaccio, Giancario Mauri, Daniele Merico, Italo Zoppis

Journal:

Computers & Operations Research

Année:

2010

Langue:

english

Fichier:

PDF, 359 KB

english, 2010

Surgical debridement with VERSAJET: an analysis of bacteria load of the wound bed pre- and post-treatment and skin graft taken. A preliminary pilot study

Marco Fraccalvieri, Roberto Serra, Erind Ruka, Enrico Zingarelli, Umberto Antoniotti, Francesca Robbiano, Marcella Viglione, Loredana Frisicale, Stefano Bruschi

Journal:

International Wound Journal

Année:

2011

Langue:

english

Fichier:

PDF, 611 KB

english, 2011

Validation of a French health-related quality of life instrument for adolescents: The VSP-A

M.C. Simeoni, P. Auquier, S. Antoniotti, C. Sapin, J.L. San Marco

Journal:

Quality of Life Research

Année:

2000

Langue:

english

Fichier:

PDF, 119 KB

english, 2000

Model building and model checking for biochemical processes

Marco Antoniotti, Alberto Policriti, Nadia Ugel, Bud Mishra

Journal:

Cell Biochemistry and Biophysics

Année:

2003

Langue:

english

Fichier:

PDF, 798 KB

english, 2003

A Sense of Life: Computational and Experimental Investigations with Models of Biochemical and Evolutionary Processes

Mishra, Bud, Daruwala, Raoul-Sam, Zhou, Yi, Ugel, Nadia, Policriti, Alberto, Antoniotti, Marco, Paxia, Salvatore, Rejali, Marc, Rudra, Archisman, Cherepinsky, Vera

Journal:

Omics A Journal of Integrative Biology

Année:

2003

Langue:

english

Fichier:

PDF, 305 KB

english, 2003

An ontological modeling approach to cerebrovascular disease studies: The NEUROWEB case

Gianluca Colombo, Daniele Merico, Giorgio Boncoraglio, Flavio De Paoli, John Ellul, Giuseppe Frisoni, Zoltan Nagy, Aad van der Lugt, István Vassányi, Marco Antoniotti

Journal:

Journal of Biomedical Informatics

Année:

2010

Langue:

english

Fichier:

PDF, 1.93 MB

english, 2010

A review of spatial computational models for multi-cellular systems, with regard to intestinal crypts and colorectal cancer development

Giovanni De Matteis, Alex Graudenzi, Marco Antoniotti

Journal:

Journal of Mathematical Biology

Année:

2013

Langue:

english

Fichier:

PDF, 1.61 MB

english, 2013

Combined analysis of chromosomal instabilities and gene expression for colon cancer progression inference

Cava, Claudia, Zoppis, Italo, Gariboldi, Manuela, Castiglioni, Isabella, Mauri, Giancarlo, Antoniotti, Marco

Journal:

Journal of Clinical Bioinformatics

Année:

2014

Langue:

english

Fichier:

PDF, 1.10 MB

english, 2014

MORE HERESY

Caravagna, Giulio, d'Onofrio, Alberto, Antoniotti, Marco, Mauri, Giancarlo

Journal:

The Lancet

Année:

1952

Langue:

english

Fichier:

PDF, 209 KB

english, 1952

Stochastic Hybrid Automata with delayed transitions to model biochemical systems with delays

Caravagna, Giulio, d'Onofrio, Alberto, Antoniotti, Marco, Mauri, Giancarlo

Journal:

Information and Computation

Année:

2014

Langue:

english

Fichier:

PDF, 1.36 MB

english, 2014

[IEEE 2012 IEEE 2nd International Conference on Computational Advances in Bio and Medical Sciences (ICCABS) - Las Vegas, NV, USA (2012.02.23-2012.02.25)] 2012 IEEE 2nd International Conference on Computational Advances in Bio and medical Sciences (ICCABS) - Poster: Characterization of distinguishing regions for Renal Cell Carcinoma discrimination

Zoppis, Italo, Borsani, Massimiliano, Gianazza, Erica, Chinello, Clizia, Albo, Giancarlo, Rocco, Francesco, Deelder, Andre M., van der Burgt, Yuri E. M., Antoniotti, Marco, Magni, Fulvio, Mauri, Gianc

Année:

2012

Langue:

english

Fichier:

PDF, 135 KB

english, 2012

Characterizing the computational power of energy-based P systems

Alhazov, Artiom, Antoniotti, Marco, Leporati, Alberto

Journal:

International Journal of Computer Mathematics

Année:

2013

Langue:

english

Fichier:

PDF, 216 KB

english, 2013

Reverse engineering dynamic temporal models of biological processes and their relationships

Naren Ramakrishnan, Satish Tadepalli, Layne T. Watson, Richard F. Helm, Marco Antoniotti, Bud Mishra and Michael H. Wigler

Journal:

Proceedings of the National Academy of Sciences

Année:

2010

Langue:

english

Fichier:

PDF, 1.83 MB

english, 2010

Reverse engineering dynamic temporal models of biological processes and their relationships

Ramakrishnan, Naren, Tadepalli, Satish, Watson, Layne T., Helm, Richard F., Antoniotti, Marco, Mishra, Bud

Journal:

Proceedings of the National Academy of Sciences

Année:

2010

Langue:

english

Fichier:

PDF, 551 KB

english, 2010

Ontological modeling at a domain interface: bridging clinical and biomolecular knowledge

Colombo, Gianluca, Merico, Daniele, Nagy, Zoltán, De Paoli, Flavio, Antoniotti, Marco, Mauri, Giancarlo

Journal:

The Knowledge Engineering Review

Année:

2009

Langue:

english

Fichier:

PDF, 805 KB

english, 2009

Apocynin Derivatives Interrupt Intracellular Signaling Resulting in Decreased Migration in Breast Cancer Cells

Klees, Robert F., De Marco, Paul C., Salasznyk, Roman M., Ahuja, Disha, Hogg, Michael, Antoniotti, Sylvain, Kamath, Lakshmi, Dordick, Jonathan S., Plopper, George E.

Journal:

Journal of Biomedicine and Biotechnology

Année:

2006

Langue:

english

Fichier:

PDF, 738 KB

english, 2006

TRONCO: an R package for the inference of cancer progression models from heterogeneous genomic data

De Sano, Luca, Caravagna, Giulio, Ramazzotti, Daniele, Graudenzi, Alex, Mauri, Giancarlo, Mishra, Bud, Antoniotti, Marco

Journal:

Bioinformatics

Année:

2016

Langue:

english

Fichier:

PDF, 862 KB

english, 2016

Ordering cancer mutational profiles of cross-sectional copy number alterations

Graudenzi, Alex, Caravagna, Giulio, Bocicor, Iuliana M., Cava, Claudia, Antoniotti, Marco, Mauri, Giancarlo

Journal:

International Journal of Data Mining and Bioinformatics

Année:

2016

Langue:

english

Fichier:

PDF, 2.17 MB

english, 2016

CABeRNET: a Cytoscape app for augmented Boolean models of gene regulatory NETworks

Paroni, Andrea, Graudenzi, Alex, Caravagna, Giulio, Damiani, Chiara, Mauri, Giancarlo, Antoniotti, Marco

Journal:

BMC Bioinformatics

Année:

2016

Langue:

english

Fichier:

PDF, 2.41 MB

english, 2016

Automatising the analysis of stochastic biochemical time-series

Caravagna, Giulio, De Sano, Luca, Antoniotti, Marco

Journal:

BMC Bioinformatics

Année:

2015

Langue:

english

Fichier:

PDF, 2.26 MB

english, 2015

Different regulation of miR-29a-3p in glomeruli and tubules in an experimental model of angiotensin II-dependent hypertension: potential role in renal fibrosis

Castoldi, Giovanna, di Gioia, Cira, Giollo, Fabrizio, Carletti, Raffaella, Bombardi, Camila, Antoniotti, Marco, Roma, Francesca, Zerbini, Gianpaolo, Stella, Andrea

Journal:

Clinical and Experimental Pharmacology and Physiology

Année:

2016

Langue:

english

Fichier:

PDF, 989 KB

english, 2016

Validation of a French Health-Related Quality of Life Instrument for Adolescents: The VSP-A

M. C. Simeoni, P. Auquier, S. Antoniotti, C. Sapin and J. L. San Marco

Journal:

Quality of Life Research

Année:

2000

Langue:

english

Fichier:

PDF, 1.11 MB

english, 2000

Abstracts: 10th Annual Conference of the International Society for Quality of Life Research (ISOQOL) || # 1756/Impact of Determinants on Adolescents' Health-Related Quality of Life (HRQL)

A. Remacle-Bonnet, M. C. Simeoni, A. Loundou, S. Antoniotti, J. L. San Marco and P. Auquier

Journal:

Quality of Life Research

Année:

2003

Langue:

english

Fichier:

PDF, 317 KB

english, 2003

[IEEE 2016 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB) - Chiang Mai, Thailand (2016.10.5-2016.10.7)] 2016 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB) - Parallel implementation of efficient search schemes for the inference of cancer progression models

Ramazzotti, Daniele, Nobile, Marco S., Cazzaniga, Paolo, Mauri, Giancarlo, Antoniotti, Marco

Année:

2016

Langue:

english

Fichier:

PDF, 763 KB

english, 2016

The role of primary tumour sidedness, EGFR gene copy number and EGFR promoter methylation in RAS/BRAF wild-type colorectal cancer patients receiving irinotecan/cetuximab

Demurtas, Laura, Puzzoni, Marco, Giampieri, Riccardo, Ziranu, Pina, Pusceddu, Valeria, Mandolesi, Alessandra, Cremolini, Chiara, Masi, Gianluca, Gelsomino, Fabio, Antoniotti, Carlotta, Loretelli, Cris

Journal:

British Journal of Cancer

Année:

2017

Langue:

english

Fichier:

PDF, 319 KB

english, 2017

Investigating the Relation between Stochastic Differentiation, Homeostasis and Clonal Expansion in Intestinal Crypts via Multiscale Modeling

Graudenzi, Alex, Caravagna, Giulio, De Matteis, Giovanni, Antoniotti, Marco, Garcia-Ojalvo, Jordi

Journal:

PLoS ONE

Année:

2014

Langue:

english

Fichier:

PDF, 7.59 MB

english, 2014

Inferring Tree Causal Models of Cancer Progression with Probability Raising

Loohuis, Loes Olde, Caravagna, Giulio, Graudenzi, Alex, Ramazzotti, Daniele, Mauri, Giancarlo, Antoniotti, Marco, Mishra, Bud, Kaderali, Lars

Journal:

PLoS ONE

Année:

2014

Langue:

english

Fichier:

PDF, 1018 KB

english, 2014

Integration of transcriptomic data and metabolic networks in cancer samples reveals highly significant prognostic power

Graudenzi, Alex, Maspero, Davide, Di Filippo, Marzia, Gnugnoli, Marco, Isella, Claudio, Mauri, Giancarlo, Medico, Enzo, Antoniotti, Marco, Damiani, Chiara

Journal:

Journal of Biomedical Informatics

Année:

2018

Langue:

english

Fichier:

PDF, 7.86 MB

english, 2018

Efficient computational strategies to learn the structure of probabilistic graphical models of cumulative phenomena

Ramazzotti, Daniele, Nobile, Marco S., Antoniotti, Marco, Graudenzi, Alex

Journal:

Journal of Computational Science

Année:

2018

Langue:

english

Fichier:

PDF, 1.12 MB

english, 2018

CoGNaC: A Chaste Plugin for the Multiscale Simulation of Gene Regulatory Networks Driving the Spatial Dynamics of Tissues and Cancer

Rubinacci, Simone, Graudenzi, Alex, Caravagna, Giulio, Mauri, Giancarlo, Osborne, James, Pitt-Francis, Joe, Antoniotti, Marco

Journal:

Cancer Informatics

Année:

2015

Fichier:

PDF, 3.38 MB

2015

Learning mutational graphs of individual tumour evolution from single-cell and multi-region sequencing data

Ramazzotti, Daniele, Graudenzi, Alex, De Sano, Luca, Antoniotti, Marco, Caravagna, Giulio

Journal:

BMC Bioinformatics

Année:

2019

Langue:

english

Fichier:

PDF, 2.14 MB

english, 2019

The Influence of Nutrients Diffusion on a Metabolism-driven Model of a Multi-cellular System

Maspero, Davide, Damiani, Chiara, Antoniotti, Marco, Graudenzi, Alex, Di Filippo, Marzia, Vanoni, Marco, Caravagna, Giulio, Colombo, Riccardo, Ramazzotti, Daniele, Pescini, Dario, Dennunzio, Alberto,

Journal:

Fundamenta Informaticae

Année:

2019

Fichier:

PDF, 8.91 MB

2019

Synthesis and Characterization of New Lithium and Boron Based Metal Organic Frameworks with NLO Properties for Application in Neutron Capture Therapy

Marabello, Domenica, Benzi, Paola, Beccari, Fabio, Canepa, Carlo, Cariati, Elena, Cioci, Alma, Costa, Marco, Durisi, Elisabetta Alessandra, Monti, Valeria, Sans Planell, Oriol, Antoniotti, Paola

Journal:

Processes

Année:

2020

Fichier:

PDF, 1.37 MB

2020

MaREA4Galaxy: Metabolic reaction enrichment analysis and visualization of RNA-seq data within Galaxy

Damiani, Chiara, Rovida, Lorenzo, Maspero, Davide, Sala, Irene, Rosato, Luca, Di Filippo, Marzia, Pescini, Dario, Graudenzi, Alex, Antoniotti, Marco, Mauri, Giancarlo

Journal:

Computational and Structural Biotechnology Journal

Année:

2020

Fichier:

PDF, 2.35 MB

2020

An Optimal Control Framework for the Automated Design of Personalized Cancer Treatments

Angaroni, Fabrizio, Graudenzi, Alex, Rossignolo, Marco, Maspero, Davide, Calarco, Tommaso, Piazza, Rocco, Montangero, Simone, Antoniotti, Marco

Journal:

Frontiers in Bioengineering and Biotechnology

Année:

2020

Fichier:

PDF, 1.59 MB

2020

Health-related quality of life in patients with RAS wild-type metastatic colorectal cancer treated with panitumumab-based first-line treatment strategy: A pre-specified secondary analysis of the Valentino study

Raimondi, Alessandra, Di Maio, Massimo, Morano, Federica, Corallo, Salvatore, Lonardi, Sara, Antoniotti, Carlotta, Rimassa, Lorenza, Sartore-Bianchi, Andrea, Tampellini, Marco, Ritorto, Giuliana, Muri

Journal:

European Journal of Cancer

Année:

2020

Fichier:

PDF, 1.43 MB

2020

Squalene: More than a Step toward Sterols

Micera, Marco, Botto, Alfonso, Geddo, Federica, Antoniotti, Susanna, Bertea, Cinzia Margherita, Levi, Renzo, Gallo, Maria Pia, Querio, Giulia

Journal:

Antioxidants

Année:

2020

Fichier:

PDF, 643 KB

2020

Oxalate Nephropathy Caused by Excessive Vitamin C Administration in 2 Patients WithÂ COVID-19

Fontana, Francesco, Cazzato, Silvia, Giovanella, Silvia, Ballestri, Marco, Leonelli, Marco, Mori, Giacomo, Alfano, Gaetano, Ligabue, Giulia, Magistroni, Riccardo, Cenacchi, Giovanna, Antoniotti, Ricca

Journal:

Kidney International Reports

Année:

2020

Fichier:

PDF, 5.12 MB

2020

[IEEE 2020 International Joint Conference on Neural Networks (IJCNN) - Glasgow, United Kingdom (2020.7.19-2020.7.24)] 2020 International Joint Conference on Neural Networks (IJCNN) - On the automatic calibration of fully analogical spiking neuromorphic chips

Papetti, Daniele M., Spolaor, Simone, Besozzi, Daniela, Cazzaniga, Paolo, Antoniotti, Marco, Nobile, Marco S.

Année:

2020

Fichier:

PDF, 2.08 MB

2020

A review of computational strategies for denoising and imputation of single-cell transcriptomic data

Patruno, Lucrezia, Maspero, Davide, Craighero, Francesco, Angaroni, Fabrizio, Antoniotti, Marco, Graudenzi, Alex

Journal:

Briefings in Bioinformatics

Année:

2020

Fichier:

PDF, 2.33 MB

2020